It's true that sometimes users click over to a thread and see some replies but not all on their instance's UI. There's things that could be done to improve it, but it's sometimes mildly confusing, but not so bad, and you can click over typically to see whatever else is happening, and people learn to
I actually think this is improvable but I mostly don't care because this isn't as big a complaint as people tend to think it is on the fediverse, the other concerns like "what instance do I pick" tend to be bigger and "oh no my server went down"
That can be improved, we'll talk about that later